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PC4Covid19 / PC4Covid19:Covid19(SARS-COV-2)组织模拟器纳米up应用程序

兰迪Heiland.; 保罗麦克林


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    <dct:description>pc4covid19 - COVID19 (SARS-CoV-2) tissue simulator nanoHUB app &lt;p&gt;&lt;strong&gt;Version:&lt;/strong&gt; 3.1&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Release date:&lt;/strong&gt; 3 July 2020&lt;/p&gt; Overview &lt;p&gt;This repository contains code and data for the nanoHUB app &lt;a href="//nanohub.org/tools/pc4covid19"&gt;//nanohub.org/tools/pc4covid19&lt;/a&gt;. Here, we primarily report on changes to the app's GUI.&lt;/p&gt; &lt;p&gt;It is based on the model at &lt;a href="//github.com/pc4covid19/COVID19"&gt;//github.com/pc4covid19/COVID19&lt;/a&gt;. Refer to that repository for a summary of changes to the model.&lt;/p&gt; Caveats and disclaimers: &lt;p&gt;&lt;strong&gt;This model is under active development using rapid prototyping:&lt;/strong&gt;&lt;/p&gt; &lt;ul&gt; &lt;li&gt;It has not been peer reviewed. &lt;/li&gt; &lt;li&gt;It is intended to drive basic scientific research and public education at this stage. &lt;/li&gt; &lt;li&gt;&lt;strong&gt;It cannot be used for public policy decisions.&lt;/strong&gt;&lt;/li&gt; &lt;li&gt;&lt;strong&gt;It cannot be used for individual medical decisions.&lt;/strong&gt;&lt;/li&gt; &lt;/ul&gt; &lt;p&gt;&lt;strong&gt;This model will be continually refined with input from the community, particularly experts in infectious diseases. The validation state will be updated as this progresses.&lt;/strong&gt;&lt;/p&gt; Release summary: 3.1: &lt;p&gt;Minor updates to &lt;code&gt;About&lt;/code&gt; text, e.g., explaining nature of stochastic results. Edits to &lt;code&gt;immune_submodels.cpp&lt;/code&gt; (see details in the core model repository).&lt;/p&gt; 3.0: &lt;p&gt;The major change to the GUI in this release is the addition of a 'Cell Types' tab. This allows editing parameters associated with &lt;code&gt;&amp;lt;cell_definitions&amp;gt;&lt;/code&gt; in the configuration file.&lt;/p&gt; &lt;p&gt;This version also includes a &lt;code&gt;&amp;lt;style&amp;gt;&lt;/code&gt; block in the Jupyter notebook that fixed an unwanted scrollbar in the lengthy &lt;code&gt;About&lt;/code&gt; tab.&lt;/p&gt; 2.0: &lt;p&gt;The major change to the GUI in this release is the addition of an 'Animate' tab. This allows animation of cells (not substrates) in the tab and the generation of a .mp4 video that can be downloaded. The animation uses the cells' SVG files.&lt;/p&gt; 1.0: &lt;p&gt;Provides a "standard" PhysiCell-based Jupyter notebook GUI consisting of 5 tabs:&lt;/p&gt; &lt;ul&gt; &lt;li&gt;About: a description of the model and the app&lt;/li&gt; &lt;li&gt;Config Basics: input parameters common to all models (e.g., domain grid, simulation time, choice/frequency of outputs)&lt;/li&gt; &lt;li&gt;Microenvironment: microenvironment parameters that are model-specific&lt;/li&gt; &lt;li&gt;User Params: user parameters that are model-specific&lt;/li&gt; &lt;li&gt;Out: Plots: output display of cells and substrates&lt;/li&gt; &lt;/ul&gt;</dct:description>
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