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pc4covid19 / pc4covid19:版本4.1:Jupyter笔记本(nanoHUB)COVID19应用

兰迪·海兰德; 保罗·麦克林


都柏林核心出口

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  <dc:creator>Randy Heiland</dc:creator>
  <dc:creator>Paul Macklin</dc:creator>
  <dc:date>2020-11-25</dc:date>
  <dc:description>pc4covid19 - COVID19 (SARS-CoV-2) tissue simulator nanoHUB app
Version: 4.1
Release date: 25 November 2020
Overview
This repository contains code and data for the nanoHUB app //nanohub.org/tools/pc4covid19.
Here, we primarily report on changes to the app's GUI.
It is based on the model at //github.com/pc4covid19/COVID19. Refer to that repository
for a 概要 of changes to the model.
Caveats and disclaimers:
This model is under active development using rapid prototyping:

It has not been peer reviewed. 
It is intended to drive basic scientific research and public education at this stage. 
It cannot be used for public policy decisions.
It cannot be used for individual medical decisions.

This model will be continually refined with input from the community, particularly experts in infectious diseases. The validation state will be updated as this progresses.
Release 概要:
4.1:
Bug fix: Cell Types custom_data were not setting/getting values to/from XML.
4.0:
Updates to the core model. The Cell Types tab now shows "flattened" versions of the cell types, instead of 
the hierarchical version in v3. The Out:Plots tab now has an additional "Extra analysis" plot and provides 
a dropdown menu of options. The widgets have been rearranged to accommodate. The Animate tab has been removed.
3.2:
Updates to the core model; nothing new in the GUI.
3.1:
Minor updates to 关于 text, e.g., explaining nature of stochastic results. Edits to immune_submodels.cpp (see details in the core model repository).
3.0:
The major change to the GUI in this release is the addition of a 'Cell Types' tab.
This allows editing parameters associated with &lt;cell_definitions&gt; in the configuration file.
This version also includes a &lt;style&gt; block in the Jupyter notebook that fixed an unwanted scrollbar in the lengthy 关于 tab.
2.0:
The major change to the GUI in this release is the addition of an 'Animate' tab.
This allows animation of cells (not substrates) in the tab and the generation of a .mp4
video that can be downloaded. The animation uses the cells' SVG files.
1.0:
Provides a "standard" PhysiCell-based Jupyter notebook GUI consisting of 5 tabs:

About: a description of the model and the app
Config Basics: input parameters common to all models (e.g., domain grid, simulation time, choice/frequency of outputs)
Microenvironment: microenvironment parameters that are model-specific
User Params: user parameters that are model-specific
Out: Plots:  output display of cells and substrates
</dc:description>
  <dc:identifier>//americinnmankato.com/record/4290732</dc:identifier>
  <dc:identifier>10.5281 / zenodo.4290732</dc:identifier>
  <dc:identifier>oai:zenodo.org:4290732</dc:identifier>
  <dc:relation>url://github.com/pc4covid19/pc4covid19/tree/v4.1</dc:relation>
  <dc:relation>doi:10.5281 / zenodo.3750175</dc:relation>
  <dc:relation>url://americinnmankato.com/communities/covid-19</dc:relation>
  <dc:relation>url://americinnmankato.com/communities/zenodo</dc:relation>
  <dc:rights>info:eu-repo/semantics/openAccess</dc:rights>
  <dc:title>pc4covid19 / pc4covid19:版本4.1:Jupyter笔记本(nanoHUB)COVID19应用</dc:title>
  <dc:type>info:eu-repo/semantics/other</dc:type>
  <dc:type>software</dc:type>
</oai_dc:dc>
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