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Epiforecasts / CovidregionalData:0.9.0 Cran释放

萨姆·伯特; 乔帕尔默; Kath Sherratt.; jonnie-bevan.; 理查德马丁 - 尼尔森; 哈米什巴斯; Flavio Finger.; 雨果格鲁森; Sebastian Funk.; Joel Hellewell.; 保罗坎贝尔; 理查德博伊斯; 帕特里克吠声; 玛丽亚; 烈性李; Joehickson.; Sophie Meakin.


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  <identifier identifierType="DOI">10.5281 / zenodo.4718466</identifier>
  <creators>
    <creator>
      <creatorName>Sam Abbott</creatorName>
      <affiliation>@epiforecasts @cmmid</affiliation>
    </creator>
    <creator>
      <creatorName>Joe Palmer</creatorName>
      <affiliation>伦敦皇家霍华大学</affiliation>
    </creator>
    <creator>
      <creatorName>Kath Sherratt</creatorName>
      <affiliation>伦敦卫生学院和热带医学</affiliation>
    </creator>
    <creator>
      <creatorName>Jonnie-Bevan</creatorName>
    </creator>
    <creator>
      <creatorName>理查德马丁 - 尼尔森</creatorName>
    </creator>
    <creator>
      <creatorName>hamishgibbs</creatorName>
      <affiliation>LSHTM</affiliation>
    </creator>
    <creator>
      <creatorName>Flavio Finger</creatorName>
    </creator>
    <creator>
      <creatorName>Hugo Gruson</creatorName>
    </creator>
    <creator>
      <creatorName>Sebastian Funk</creatorName>
      <affiliation>伦敦卫生学院&amp; Tropical Medicine</affiliation>
    </creator>
    <creator>
      <creatorName>Joel Hellewell</creatorName>
      <affiliation>LSHTM</affiliation>
    </creator>
    <creator>
      <creatorName>Paul Campbell</creatorName>
      <affiliation>@epicentre-msf</affiliation>
    </creator>
    <creator>
      <creatorName>Richard Boyes</creatorName>
      <affiliation>Centrica PLC</affiliation>
    </creator>
    <creator>
      <creatorName>Patrick Barks</creatorName>
      <affiliation>@epicentre-msf</affiliation>
    </creator>
    <creator>
      <creatorName>Maria</creatorName>
      <affiliation>EBPI @uzh</affiliation>
    </creator>
    <creator>
      <creatorName>Haze Lee</creatorName>
      <affiliation>@goodoc</affiliation>
    </creator>
    <creator>
      <creatorName>joeHickson</creatorName>
      <affiliation>@MetOffice</affiliation>
    </creator>
    <creator>
      <creatorName>Sophie Meakin</creatorName>
    </creator>
  </creators>
  <titles>
    <title>Epiforecasts / CovidregionalData:0.9.0 Cran释放</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2021</publicationYear>
  <dates>
    <date dateType="Issued">2021-04-25</date>
  </dates>
  <resourceType resourceTypeGeneral="Software"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">//americinnmankato.com/record/4718466</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsSupplementTo">//github.com/epiforecasts/covidregionaldata/tree/v0.9.0</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281 / ZENODO.3957539</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsPartOf">//americinnmankato.com/communities/covid-19</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsPartOf">//americinnmankato.com/communities/zenodo</relatedIdentifier>
  </relatedIdentifiers>
  <version>v0.9.0</version>
  <rightsList>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;In this release &lt;code&gt;covidregionaldata&lt;/code&gt; has been substantially retooled to be more robust, and to handle data in a more transparent way. Adding new data sets and functionality has also been made more streamlined. As this update is a substantial package refactor some breaking changes may be been inadvertently introduced. If requiring the old behaviour please install &lt;code&gt;[email protected]&lt;/code&gt; from GitHub.&lt;/p&gt;
&lt;p&gt;Thanks to @joseph-palmer, @RichardMN, and @kathsherratt for major contributions to this release. Thanks to @RichardMN for volunteering his time.&lt;/p&gt;
New features
&lt;ul&gt;
&lt;li&gt;Track data processing from raw to clean using the &lt;code&gt;step = TRUE&lt;/code&gt; argument in &lt;code&gt;get_regional_data()&lt;/code&gt;.&lt;/li&gt;
&lt;li&gt;Filter datasets for regions and countries of interest. &lt;/li&gt;
&lt;li&gt;Access the underlying methods for data sets and all steps in the data processing pipeline.&lt;/li&gt;
&lt;/ul&gt;
Documentation
&lt;ul&gt;
&lt;li&gt;All vignettes have been updated for readability.&lt;/li&gt;
&lt;li&gt;A quickstart has been added to the package README.&lt;/li&gt;
&lt;/ul&gt;
Technical improvements
&lt;ul&gt;
&lt;li&gt;&lt;code&gt;get_regional_data()&lt;/code&gt; and &lt;code&gt;get_national_data()&lt;/code&gt; now use R6 method dispatch. This is an internal change and so should have minimal user impact for users of the &lt;code&gt;get_&lt;/code&gt; functions. However, all datasets are now available to be used as R6 methods (see &lt;code&gt;get_available_datasets&lt;/code&gt;) which may allow for more modular use cases. These classes can also be initialised using &lt;code&gt;initialise_dataclass()&lt;/code&gt; which is used internally by both &lt;code&gt;get_regional_data()&lt;/code&gt; and &lt;code&gt;get_national_data()&lt;/code&gt;.&lt;/li&gt;
&lt;li&gt;Unit testing has been separated from data downloading which is now tested individually by data set. This allows for contributors to more easily assess the impact of their additions and also allows us to publish data status updates for each data sets (see the README: &lt;a href="//github.com/epiforecasts/covidregionaldata#readme"&gt;//github.com/epiforecasts/covidregionaldata#readme&lt;/a&gt;).&lt;/li&gt;
&lt;/ul&gt;
Deprecated functions
&lt;ul&gt;
&lt;li&gt;&lt;code&gt;get_available_datasets()&lt;/code&gt; replaces &lt;code&gt;get_info_covidregionaldata()&lt;/code&gt; to view available data. &lt;code&gt;get_info_covidregionaldata()&lt;/code&gt; is deprecated.&lt;/li&gt;
&lt;li&gt;&lt;code&gt;get_interventions_data()&lt;/code&gt; is deprecated. These data no longer update as of December 2020. Check for alternatives at &lt;a href="//supertracker.spi.ox.ac.uk/policy-trackers/"&gt;//supertracker.spi.ox.ac.uk/policy-trackers/&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;&lt;code&gt;get_linelist&lt;/code&gt; is deprecated. Linelist stopped updating June 2020. Up to date linelist data are now behind a login: access at &lt;a href="//global.health/"&gt;//global.health/&lt;/a&gt;. We are working on a solution for accessing with &lt;code&gt;covidregionaldata&lt;/code&gt;.&lt;/li&gt;
&lt;/ul&gt;
Data changes since 0.8.3
&lt;ul&gt;
&lt;li&gt;Colombia now has capitalized region names.&lt;/li&gt;
&lt;li&gt;Germany level 2 region codes have been removed (previously was all NAs).&lt;/li&gt;
&lt;li&gt;India uses NA for unknown region codes, a change from IN-UN previously.&lt;/li&gt;
&lt;li&gt;Italy column region is now regioni.&lt;/li&gt;
&lt;li&gt;Mexico codes 'inegi_code' has been changed to 'inegi'.&lt;/li&gt;
&lt;li&gt;UK Level 1 'ons_region_code' is now 'region_code'.&lt;/li&gt;
&lt;li&gt;UK level 2 "ltla_code" is now "local_authority_code".&lt;/li&gt;
&lt;li&gt;&lt;code&gt;get_available_datasets()&lt;/code&gt; now return an origin column rather than a country column and a type column rather than a get_data_function to better reflect the types of data supported.&lt;/li&gt;
&lt;/ul&gt;</description>
  </descriptions>
</resource>
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